SAMEA3302727

EXTERNAL

Sample

Accession

SAMEA3302727

Alias

HGDP01028

Sex

Male

Center

Description

simons_data_sample_174

Source publications

Y-DNA pathway E1b1a1a1a

Called haplogroup is not yet placed in the tree.

mtDNA pathway L3d3a1a

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
chrM:12528A>G
chrM:12528A>G, chrM:15547T>C
L3d1'2'3'4'5'6
chrM:13309T>C, chrM:13707C>T, chrM:345T>C, chrM:4570G>A, chrM:6847A>G, chrM:8041T>C
L3d3
chrM:1143G>A, chrM:14484A>G, chrM:4111T>C
L3d3a
chrM:10322A>G, chrM:10827A>G, chrM:15701C>T, chrM:15734T>C, chrM:2921C>G, chrM:7674G>A
L3d3a1
chrM:14631A>G, chrM:15727T>C
L3d3a1a
chrM:1840T>C

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina HiSeq 2000 · Layout: PAIRED · Reads: 678646645 · Read length: — · Date: 2016-04-05

File	Format	Size	Reference	Aligner	md5
ERR1347714_1.fastq.gz	FASTQ	55.2 GB	—	—	8fccd7f9903813b91bd2186ec3ee18ba	Download
ERR1347714_2.fastq.gz	FASTQ	55.1 GB	—	—	db6074b57b1c0ba86479499908fa7de6	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.