SAMEA3302712

EXTERNAL

Sample

Accession

SAMEA3302712

Alias

HGDP00533

Sex

Male

Center

Description

simons_data_sample_74

Source publications

Y-DNA pathway R1b1a2a1a1

Called haplogroup is not yet placed in the tree.

mtDNA pathway U5b1c1

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
U
chrM:10890A>G, chrM:11731A>G, chrM:11795G>A
U5
chrM:13040T>C, chrM:15693C>T
U5a'b
chrM:2620T>C, chrM:8900G>A
U5b
chrM:13605T>C, chrM:16142C>T, chrM:7191A>G
U5b1-T16189C!
chrM:5079A>G
chrM:15734T>C
chrM:15734T>C
U5b1c1
chrM:14614T>C, chrM:15759G>A

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina HiSeq 2000 · Layout: PAIRED · Reads: 688909405 · Read length: — · Date: 2016-05-03

File	Format	Size	Reference	Aligner	md5
ERR1395619_1.fastq.gz	FASTQ	56.1 GB	—	—	6a0e0c5cd9d3d058161c8467a32e79c9	Download
ERR1395619_2.fastq.gz	FASTQ	57.5 GB	—	—	ed06453ddfb2e52a61cc2572ddae8057	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.