SAMEA3302681

EXTERNAL
Sample
Accession
SAMEA3302681
Alias
IHW9193
Sex
Male
Center
Description
simons_data_sample_116
Source publications
Y-DNA pathway C-FT12878
From de-novo tree placement
  1. Y
    245509 245509 ybp
  2. A0-T
    A2594, A2614, A2646, A2662, A2722, A2743, A2744, A2752, A2757, A2758, A2788, A2789, A2797, A2806, A2846, A2855, A2859, A2868, A2873, A2879, A2882, A2894, A2906, A2934, A2935, A2937, A2943, A2944, A2949, A2950, A2979, A2981, A2989, A3079, A3085, A4461, A4748, A5111, DU00186, DU00210, DU00221, DU00834, DU01556, DU02438, DU02444, DU02446, DU02455, DU02474, DU02479, DU02481, DU02482, DU02490, DU02500, DU02501, DU02505, DU02507, DU02511, DU02513, DU02516, DU02518, DU02529, DU02535, DU02540, DU02543, DU02550, DU02551, DU02559, DU02560, DU02568, DU02570, DU02572, DU02574, DU02600, DU02611, DU02618, DU02621, DU02622, DU02627, DU02629, DU02630, DU02641, DU02642, DU02656, DU02660, DU02665, DU02675, DU02678, DU02694, DU02697, DU02701, DU02704, DU02724, DU02726, DU02727, DU02734, DU02739, DU02741, DU02744, DU02747, DU02748, DU05466, DU05468, DU05475, DU05845, DU05941, DU06109, DU06117, DU06120, DU06573, DU06782, DU06784, DU06808, DU06815, DU06821, DU06824, DU06836, DU06847, DU06852, DU06853, DU06858, DU06859, DU06860, DU06891, DU06897, DU06903, DU06905, DU06913, DU06916, DU06924, DU06925, DU06950, DU06952, DU06960, DU06968, DU06991, DU06995, DU07000, DU07005, DU07006, DU07021, DU07023, DU07162, DU07170, DU07179, DU07180, DU07182, DU07183, DU07184, DU07188, DU07190, DU07191, DU07203, DU07204, DU07205, DU07206, DU07208, DU07209, DU07216, DU07217, DU07230, DU07234, DU07236, FGC24703, FGC24753, FGC24763, FGC24769, FGC24775, FGC24777, FGC24781, FGC24792, FGC24794, FGC24800, FGC24809, FGC24824, FGC24833, FGC24998, FGC25061, FGC25066, FGC25163, FGC25194, FGC25307, FGC25328, FGC25366, FGC25379, FGC25394, FGC25403, FGC25418, FGC25442, FGC25450, FGC25452, FGC25454, FGC25464, FGC25465, FGC25470, FGC25479, FGC25482, FGC25536, FGC25541, FGC25543, FGC25544, FGC25557, FGC25562, FGC25583, FGC25588, FGC25590, FGC25615, FGC25656, FGC25660, FGC25688, FGC25695, FGC25771, FGC25784, FGC25797, FGC25803, FGC25813, FGC25815, FGC25816, FGC25830, FGC25849, FGC25853, FGC25860, FGC25864, FGC25865, FGC25866, FGC25874, FGC25887, FGC25902, FGC25909, FGC25926, FGC25943, FGC25945, FGC25962, FGC26020, FGC26132, FGC26139, FGC26182, FGC26187, FGC26188, FGC26192, FGC26197, FGC26237, FGC26238, FGC26277, FGC26279, FGC26280, FGC26289, FGC26298, FGC26341, FGC26343, FGC26356, FGC26370, FGC26375, FGC26390, FGC26406, FGC26410, FGC26423, FGC26431, FGC26434, FGC26435, FGC26439, FGC26453, FGC26455, FGC26462, FGC26470, FGC26472, FGC26492, FGC26493, FGC26501, FGC26502, FGC26514, FGC26528, FGC26531, FGC26561, FGC26577, FGC26578, FGC26591, FGC26627, FGC26633, FGC26634, FGC26637, FGC26639, FGC26648, FGC26653, FGC26660, FGC26675, FGC26682, FGC26697, FGC26712, FGC26735, FGC26737, FGC26760, FGC26779, FGC26795, FGC26817, FGC26818, FGC26829, FGC26833, FGC26841, FGC26845, FGC26850, FGC26868, FGC26871, FGC26897, FGC26959, FGC26969, FGC26987, FGC27007, FGC27025, FGC27035, FGC27037, FGC27046, FGC27050, FGC27063, FGC27064, FGC27067, FGC27077, FGC27087, FGC27093, FGC27103, FGC27107, FGC27112, FGC27115, FGC27136, FGC27145, FGC27153, FGC27155, FGC27198, FGC27206, FGC27215, FGC27228, FGC27255, FGC27262, FGC27300, FGC27302, FGC27345, FGC27372, FGC27381, FGC27394, FGC27408, FGC27410, FGC27412, FGC27419, FGC27443, FGC27460, FGC27476, FGC27477, FGC27486, FGC27497, FGC27501, FGC27502, FGC27506, FGC27527, FGC27538, FGC27542, FGC27555, FGC27557, FGC27576, FGC27583, FGC27593, FGC27695, FGC27698, FGC27704, FGC27710, FGC27721, FGC27728, FGC27730, FGC27733, FGC27734, FGC27736, FGC27738, FGC27752, FGC27771, FGC27774, FGC27782, FGC27785, FGC27793, FGC27795, FGC27820, FGC27826, FGC27834, FGC27871, FGC27878, FGC27884, FGC27886, FGC27910, FGC27913, FGC27917, FGC27918, FGC27921, FGC27922, FGC27924, FGC27929, FGC27936, FGC27948, FGC27968, FGC27969, FGC27971, FGC27974, FGC28010, FT97438, L1090, L1098, L1099, L1101, L1116, L1118, L1120, L1123, L1127, L1129, L1130, L1132, L1135, L1142, L1143, L1145, L1150, PR4010, V1038, V1054, V1070, V1138, V1165, V1171, V1193, V1201, V1222, V1230, V1238, V1285, V1291, V1298, V1411, V1432, V1447, V1467, V1475, V1479, V1537, V1560, V1566, V1573, V1579, V1634, V1675, V1711, V1826, V1833, V1896, V1941, V2086, V2132, V2152, V2188, V2241, V2247, V2432, V2452, V2490, V2628, V2657, V2666, V2730, V2765, V2819, V2828, V2887, V2938, V2961, V2989, V3033, V3035, V3112, V3131, V3328, V3437, V3454, V3470, V3484, V3593, V3630, V3754, V3762, V3765, V3809, V3810, V3819, V3886, V3894, V3906, V3967, V3970, V3987, V4021, V4044, V4047, V4060, V4071, V4119, V4129, V4151, V4172, V4195, V4375, V4421, V4492, V4549, V4567, V4582, V4622, V4673, V4676, V4942, V4955, V4981, V5000, V5024, V5028, V5077, V5094, V5209, V5219, V5231, V5380, V5482, V5511, V5512, V5519, V5545, V5546, V5561, V5566, V5584, V5595, V5628, V5947, V5957, V5975, V5990, V6008, V6027, V6053, V6068, V6102, V6126, V6142, V6184, V6189, V6192, V6230, V6240, V6296, V6362, V6492, V6493, V6566, V6585, V6637, V6644, V6663, V6680, V6723, V6743, V6754, V6757, V6784, V6785, V6822, V6863, V6900, V6906, V6915, V6920, V7024, V7027, V7029, V7086, V7470, V7487, V7495, V7496, V7506, V7517, V7539, V7556, V7613, V7623, V7673, V7684, V7691, V7702, V7725, V7804, V7871, V7887, V7941, V7966, V7995, V8003
    221532 163352 ybp
  3. A1
    A4698, A4733, A4739, A4762, A4825, A4826, A4951, BY145693, DU00226, DU00336, DU00345, DU00907, DU01110, DU01277, DU01311, DU01501, DU01807, DU02412, DU02441, DU02453, DU02473, DU02475, DU02476, DU02534, DU02542, DU02554, DU02564, DU02565, DU02581, DU02583, DU02589, DU02693, DU02703, DU02717, DU02745, DU05463, DU05472, DU05673, DU06108, DU06127, DU06128, DU06131, DU06135, DU06136, DU06774, DU06775, DU06778, DU06779, DU06790, DU06802, DU06805, DU06814, DU06816, DU06864, DU06865, DU06870, DU06877, DU06878, DU06879, DU06886, DU06887, DU06907, DU06908, DU06910, DU06926, DU06928, DU06929, DU06938, DU06951, DU06958, DU06963, DU06986, DU06993, DU06997, DU07002, DU07004, DU07013, DU07015, DU07028, DU07029, DU07159, DU07161, DU07175, DU07189, DU07228, FGC24678, FGC24722, FGC24725, L1002, L1004, L1005, L1084, L985, L986, P305, V1130, V1360, V1522, V168, V1793, V1808, V2049, V2070, V2349, V2368, V238, V241, V250, V2613, V2732, V2842, V2843, V2980, V3222, V3315, V3624, V3653, V3682, V3711, V3832, V3937, V3955, V4189, V4411, V4437, V4508, V4581, V5229, V6309, V6360, V6435, V6476, V6594, V6632, V6659, V7529, V7895, V7964, Z7768, Z8464, Z8553, Z8555, Z8559, Z8723, Z8757, Z8772, Z8773, Z8784, Z8787, Z8794, Z8802, Z8807, Z8809, Z8824, Z8829, Z8830, Z8834, Z8839, Z8883, Z8892, Z8903, Z8925, Z8983, Z9014, Z9033, Z9047, Z9116, Z9128, Z9164, Z9185, Z9186, Z9292, Z9301, Z9309, Z9353, Z9360, Z9418, Z9446, Z9457, Z9467, Z9495, Z9523, Z9569, Z9574, Z9590, Z9616, Z9619, Z9629, Z9636, Z9641, Z9648, Z9649, Z9661, Z9719, Z9749, Z9789, Z9795, Z9796, Z9808, Z9820, Z9830, Z9832, Z9840, Z9859, Z9874
    152141 132724 ybp
  4. A1b
    DU01149, DU02506, DU02632, DU02636, DU02728, DU05454, DU05476, DU06106, DU06119, DU06572, DU06844, DU06851, DU06861, DU06867, DU06898, DU06906, DU06918, DU06940, DU06949, DU06961, DU06964, DU06998, DU07009, DU07047, FGC24598, FGC24604, FGC24611, FGC24616, FGC24627, L1009, L1013, L1053, L989, P108, V1820, V221, V2590, V3785, V4076, Y8279, Z11891, Z11899, Z11900, Z11906, Z11907, Z11910, Z11913, Z11916, Z11918, Z11919, Z17892, Z17895, Z17896, Z17897
    130265 125244 ybp
  5. BT
    DU02528, M299, M42, M9118, M9336, M94, PF1284, PF6234
    117150 116364 ybp
  6. CT
    A4776, CTS11575, CTS5457, CTS7295, DU00344, DU00349, DU00510, DU01057, DU01121, DU01173, DU01205, DU01216, DU01622, DU02411, DU02431, DU02432, DU02442, DU02443, DU02445, DU02447, DU02449, DU02450, DU02469, DU02480, DU02486, DU02508, DU02517, DU02519, DU02526, DU02530, DU02531, DU02539, DU02545, DU02552, DU02555, DU02580, DU02582, DU02586, DU02590, DU02598, DU02601, DU02603, DU02604, DU02605, DU02610, DU02614, DU02617, DU02628, DU02639, DU02651, DU02653, DU02661, DU02672, DU02702, DU02706, DU02735, DU02742, DU05451, DU05452, DU05455, DU05458, DU05462, DU05474, DU05478, DU05480, DU05481, DU06124, DU06125, DU06133, DU06134, DU06227, DU06551, DU06571, DU06730, DU06765, DU06770, DU06776, DU06781, DU06788, DU06793, DU06794, DU06796, DU06798, DU06799, DU06801, DU06806, DU06811, DU06817, DU06822, DU06828, DU06829, DU06830, DU06839, DU06841, DU06842, DU06846, DU06848, DU06849, DU06855, DU06866, DU06872, DU06873, DU06882, DU06888, DU06892, DU06893, DU06894, DU06895, DU06896, DU06899, DU06914, DU06927, DU06932, DU06935, DU06942, DU06947, DU06982, DU06989, DU06994, DU07007, DU07010, DU07012, DU07014, DU07016, DU07017, DU07018, DU07025, DU07027, DU07157, DU07158, DU07163, DU07172, DU07174, DU07178, DU07187, DU07193, DU07194, DU07198, DU07199, DU07211, DU07212, DU07214, DU07227, DU07233, DU07281, DU07284, DU07286, FGC24511, FGC24531, FGC25345, L1492, M11839, M168, M294, M5576, M5577, M5585, M5587, M5588, M5589, M5591, M5597, M5599, M5601, M5603, M5605, M5606, M5607, M5608, M5609, M5610, M5611, M5612, M5613, M5614, M5615, M5616, M5617, M5618, M5619, M5620, M5622, M5624, M5625, M5626, M5627, M5628, M5629, M5631, M5632, M5633, M5636, M5639, M5640, M5641, M5643, M5648, M5650, M5651, M5652, M5655, M5656, M5660, M5661, M5662, M5669, M5671, M5675, M5676, M5679, M5680, M5681, M5682, M5683, M5684, M5690, M5691, M5694, M5695, M5698, M5699, M5706, M5707, M5708, M5711, M5712, M5713, M5715, M5716, M5719, M5721, M5723, M5724, M5726, M5730, M5737, M5741, M5745, M5747, M5749, M5750, M5751, M5752, M5754, M5756, M5757, M5758, M5760, M5762, M5765, M5766, M5769, M5770, M5771, M5774, M5775, M5777, M5778, M5781, M5782, M5783, M5784, M5785, M5786, M5788, M5790, M5794, M5795, M5796, M5797, M5800, M5808, M5814, M5817, M5819, M5821, M5822, M5823, M8948, M9022, P9, PF1016, PF228, PF316, PF342, PF500, PF667, V2472, V3858, Y1455, Y1526, Y1817, Z17711
    105901 78107 ybp
  7. CF
    M3727, P143
    77339 77045 ybp
  8. C
    A20733, BY1568, BY1801, BY18392, BY18413, BY2391, BY2462, BY2469, BY44434, CTS10083, CTS10116, CTS10165, CTS10256, CTS10442, CTS10509, CTS10534, CTS10707, CTS10720, CTS10782, CTS1083, CTS11149, CTS11176, CTS11412, CTS11544, CTS11820, CTS12472, CTS12625, CTS12873, CTS1384, CTS1396, CTS1606, CTS1631, CTS179, CTS182, CTS2014, CTS2045, CTS2267, CTS2311, CTS2317, CTS2326, CTS2377, CTS2416, CTS2550, CTS2599, CTS2628, CTS2941, CTS2955, CTS3151, CTS3153, CTS3221, CTS3233, CTS3658, CTS387, CTS3910, CTS4032, CTS4676, CTS4686, CTS4934, CTS5151, CTS5383, CTS5441, CTS5813, CTS5900, CTS5958, CTS6203, CTS6266, CTS6378, CTS6492, CTS6893, CTS6898, CTS6916, CTS7752, CTS7844, CTS7930, CTS8148, CTS840, CTS8566, CTS8572, CTS8769, CTS9413, CTS9611, CTS9660, CTS9662, CTS9679, CTS9705, DU00992, DU02719, DU05692, DU05718, DU06104, DU07828, DU07839, DU07942, DU08062, DU08063, DU08326, DU08580, DU08588, DU08698, DU09027, DU09199, DU09693, DU09891, DU10229, DU10266, DU10295, DU10494, DU11419, DU11599, DU11765, DU11822, DU11864, DU12167, DU12821, DU12969, DU13008, DU13019, DU13020, DU13100, DU13122, DU13244, DU13283, DU13438, DU13529, DU13695, DU13722, DU13723, DU13853, DU14251, DU14499, DU14687, DU14850, DU14935, DU15023, DU15067, DU15089, DU15322, DU15410, DU15417, DU15597, DU15860, DU15874, DU15981, DU16485, DU16606, DU16640, DU16901, DU17091, DU17334, F1118, F1367, F13997, F1490, F1727, F1804, F1865, F1987, F2067, F2211, F2253, F2258, F2305, F2434, F2446, F2449, F2485, F2501, F2606, F2607, F2678, F2969, F2990, F3043, F3082, F3127, F3311, F3319, F3388, F3395, F3400, F3462, F3670, F3698, F3703, F3712, F3719, F3801, F3877, F3902, F4000, F5823, F5885, F5891, F5928, F6305, F6322, F6324, F6392, F6713, F6812, F6814, F7426, F7535, F847, F909, F917, F9328, F9833, FGC16179, FGC16181, FGC16182, FGC16185, FGC45529, FGC45600, FGC83754, FGC83755, FGC84565, FT65920, FT65921, FTA69230, M130, M216, MF796573, P184, P260, P325, PF956, S3179, V1075, V1234, V1308, V1354, V1580, V183, V1989, V199, V2015, V2099, V2200, V2258, V232, V2701, V2710, V2801, V2823, V3288, V3332, V3375, V3497, V3533, V3554, V3578, V3600, V3643, V4042, V5189, V77, V8036, Y11105, Y11114, Y11119, Y1765, Y1785, Y23613, Y2794, Y2795, Y4470, Y4471, Y6685, Y6691, Z3859, Z3868, Z3876, Z3884, Z3890, Z3901, Z3906, Z3909, Z3913, Z3918, Z3923, Z3945, Z3958, Z3962, Z3974, Z3977, Z3981, Z3983, Z3986, Z4014, Z4059, Z4071, Z4072, Z4073, Z4081, Z4082, Z4083, Z4090, Z4091, Z4093, Z4095, Z4096, Z4099, Z4130, Z4139, Z4145, Z4146, Z4157, Z4159, Z7078, Z7104, Z7122, Z7149, Z7158, Z7209, Z7249, Z7780, Z7792, Z7975, Z7990
    79588 56728 ybp
  9. C-F3393
    DU00615, DU10525, DU10981, DU13973, DU17082, DU17351, F1171, F3393, F9182, FT180928, K29, K30, K31, K33, K35, Z3998, Z7111
    56658 55677 ybp
  10. C-K150
    DU01045, DU07306, DU07348, DU07927, DU08202, DU08262, DU08424, DU09604, DU10725, DU10791, DU14427, DU14852, DU15985, DU16112, DU16405, DU16888, DU17319, F1370, F8908, K116, K150, K164, Y27076, Z16474, Z16480
    56152 55466 ybp
  11. C-FT12878
    B477, BY10285, BY14365, BY18655, BY53438, BZ4078, CTS11539, CTS8573, CTS999, F14836, F14976, F14988, F15310, F15322, F15600, F15853, F15866, F15890, F15981, F16031, F16070, F16275, F16301, F16380, F16507, F16577, F16597, F16607, F16653, F16657, F16673, F16803, F16885, F16948, F16949, F16994, F17085, F17121, F17153, F17180, F17227, F17233, F17245, F17330, F17438, F17490, F17560, F17690, F17725, F17739, F17760, F17783, F17789, F17898, F18401, F18773, F18944, F18966, F18969, F19049, F19060, F19092, F19267, F19276, F19361, F19483, F19720, F20062, F20122, F20131, F20405, F20598, F20639, F20745, F20812, F20815, F20858, F21016, F21088, F21308, F21562, F21625, F21627, F21653, F21668, F21720, F21845, F21871, F21923, F22237, F22298, F22423, F22967, F22995, F23003, F23140, F23155, F23270, F23497, F23507, F23599, F23726, F23975, F23976, F24128, F24265, F24439, F24479, F24630, F24737, F24756, F24760, F24850, F24929, F24934, F25244, F25267, F25269, F25339, F25771, F25786, F25831, F25848, F25856, F25926, F26203, F26213, F26216, F26270, F26361, F26485, F26811, F26814, FGC10375, FGC17629, FGC21248, FGC23419, FT105386, FT106518, FT11625, FT11819, FT11827, FT12829, FT12878, FT210711, FT275583, FT314608, FT344706, FT344926, FT344995, FT345220, FT345268, FT345831, FT346000, FT346128, FT346211, FT346300, FT346325, FT346328, FT346696, FT346792, FT346817, FT346944, FT346985, FT347051, FT347135, FT347385, FT347532, FT347620, FT347655, FT347656, FT347665, FT347849, FT348371, FT348530, FT348549, FT348593, FT348610, FT348624, FT348646, FT348684, FT348808, FT349127, FT349166, FT349209, FT349246, FT349254, FT349280, FT394026, FT394084, FT394085, FT394086, FT394087, FT394088, FT394089, FT46960, FT92614, M210, M347, MF255719, PH1136, PH130, PH1309, PH1321, PH1421, PH1474, PH1502, PH1515, PH1523, PH1584, PH1634, PH1642, PH1687, PH1788, PH1835, PH1846, PH2001, PH2191, PH2243, PH2248, PH226, PH2341, PH2354, PH2363, PH2474, PH2497, PH251, PH255, PH2615, PH2701, PH2714, PH2759, PH2763, PH2823, PH2836, PH2919, PH2934, PH3092, PH3198, PH3244, PH338, PH3409, PH3416, PH3430, PH3548, PH3601, PH3612, PH3657, PH3688, PH4003, PH4043, PH4087, PH41, PH415, PH4186, PH4346, PH4407, PH4534, PH4572, PH4637, PH4665, PH4682, PH4691, PH4715, PH475, PH4825, PH4960, PH4967, PH5139, PH5159, PH5224, PH5273, PH5297, PH5328, PH623, PH641, PH666, PH689, PH706, PH707, PH793, PH857, SK1010, SK1013, Y12480, Y149178, Y162099, Y174522, Y191305, Y27084, Y27087, Y27091, Y27097, Y27099, Y27140, Y7519, Z31877, Z31878, Z31879, Z31880, Z31881, Z31882, Z31883, Z31884, Z31886, Z31887, Z31888, Z31889, Z31890, Z31891, Z32049, Z40223, Z40224, Z40225, Z40226, Z40227, Z40228, Z40229, Z40231, Z40232, Z40234, Z40235, Z40236, Z40237, Z40238, Z40239, Z40240, Z40241, Z40242, Z40243, Z40244, Z40245, Z40420, Z40421, Z40422
    54396 23639 ybp
mtDNA pathway N
From de-novo tree placement
  1. L1'2'3'4'5'6'7
    chrM:16181G>A
  2. L2'3'4'5'6'7
    chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
  3. L2'3'4'6
    chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
  4. L3'4
    chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
  5. L3
    chrM:193A>G, chrM:442A>G
  6. N
    chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
Origin
Sequencing & coverage

No sequencing data available.

Sequence data & files
Instrument: Illumina HiSeq 2000 · Layout: PAIRED · Reads: 666131445 · Read length: — · Date: 2016-05-03
File Format Size Reference Aligner md5
ERR1395600_1.fastq.gz FASTQ 54.4 GB ad49ca9644e4eb7cb612c9391a6c2a30 Download
ERR1395600_2.fastq.gz FASTQ 55.7 GB 360c32c275ce1fb998fa82e0ae9e29e3 Download
Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.