SAMEA3270064

EXTERNAL

Sample

Accession

SAMEA3270064

Alias

I0022

Sex

Female

Center

Reich Lab

Description

LBK_EN

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway T2e

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
R2'JT
JT
chrM:10674A>G, chrM:14875C>A, chrM:15549T>C, chrM:3639T>C
T
chrM:12791G>A, chrM:1312G>A, chrM:133G>A, chrM:14328G>A, chrM:15030A>G, chrM:15351G>A, chrM:15717C>T, chrM:4340A>G, chrM:8120G>A, chrM:9886T>C
T2
chrM:11235A>G, chrM:13656A>G
T2e
chrM:15576G>A, chrM:16142C>T

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: NextSeq 500 · Layout: SINGLE · Reads: 730204 · Read length: — · Date: 2015-03-01

File	Format	Size	Reference	Aligner	md5
I0022.390k.bam	BAM	37.0 MB	—	—	62b6f5ed0da98eb5565ab13cd6394041	Download

Instrument: Illumina MiSeq · Layout: SINGLE · Reads: 61195 · Read length: — · Date: 2015-03-01

File	Format	Size	Reference	Aligner	md5
S0022__aln.sort.mapped.rmdupse_adna_v2.bam	BAM	3.1 MB	—	—	b8e0013575700c6233d2478e5c8d92e1	Download

Instrument: NextSeq 500 · Layout: SINGLE · Reads: 94624 · Read length: — · Date: 2015-03-01

File	Format	Size	Reference	Aligner	md5
S0022_L2__aln.sort.mapped.rmdupse_adna_v2.bam	BAM	3.0 MB	—	—	ba1d7f59609946e9acf9f29d8c318b57	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.