SAMEA104408065

EXTERNAL

Sample

Accession

SAMEA104408065

Alias

I5116

Sex

Female

Center

HARVARD MEDICAL SCHOOL, DEPARTMENT OF GENETICS

Description

Hungary_LCA

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway W

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
W
chrM:11097C>T, chrM:11837T>C, chrM:133G>A, chrM:15307G>C, chrM:15715C>T, chrM:16181A>G, chrM:16196T>C, chrM:16199G>A, chrM:2928A>G, chrM:4469G>A, chrM:4883G>A, chrM:667T>C, chrM:7674G>A, chrM:8417G>A

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: NextSeq 500 · Layout: SINGLE · Reads: 3806 · Read length: — · Date: 2018-02-16

File	Format	Size	Reference	Aligner	md5
I5116_MT.bam	BAM	119.3 KB	—	—	6971017809316d4088105a20bf0531d7	Download

Instrument: NextSeq 500 · Layout: SINGLE · Reads: 146762 · Read length: — · Date: 2018-02-16

File	Format	Size	Reference	Aligner	md5
I5116_1240k.bam	BAM	7.2 MB	—	—	3873c87a81cb894e39d4ea7cde0e03c3	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.