SAMEA104358222

EXTERNAL

Sample

Accession

SAMEA104358222

Alias

I2369

Sex

Male

Center

HARVARD MEDICAL SCHOOL

Description

Baden_LCA

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway J2a1a1

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
R2'JT
JT
chrM:10674A>G, chrM:14875C>A, chrM:15549T>C, chrM:3639T>C
J
chrM:12035A>G, chrM:13131G>A, chrM:15492C>T, chrM:15942C>T, chrM:16287C>T, chrM:16482T>C, chrM:9821A>G
J2
chrM:14680G>A, chrM:16142C>T, chrM:6899C>T
J2a
chrM:10800G>A, chrM:16187T>C, chrM:9922A>G
J2a1a1
chrM:13145A>G, chrM:13556A>G, chrM:15568G>A, chrM:15654T>C, chrM:15684C>T, chrM:16207A>G, chrM:7212G>A

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: NextSeq 500 · Layout: SINGLE · Reads: 4855527 · Read length: — · Date: 2017-11-08

File	Format	Size	Reference	Aligner	md5
I2369.1240k.bam	BAM	266.9 MB	—	—	fa6c5a9a616183e963606866a9385431	Download

Instrument: NextSeq 500 · Layout: SINGLE · Reads: 36879 · Read length: — · Date: 2017-11-08

File	Format	Size	Reference	Aligner	md5
I2369.mt.bam	BAM	1.4 MB	—	—	b6d87a9b9c6e8e3411987912d9585d74	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.